41 lines
1.4 KiB
Docker
41 lines
1.4 KiB
Docker
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# Update conda
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RUN conda update -n base conda -y
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USER root
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# Install rpy2 to share data between Python and R
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RUN conda install rpy2=2.9.4 plotly=4.4.1
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RUN conda install -c conda-forge ipyleaflet
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# Install important packages and Graphviz
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RUN set -ex \
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&& buildDeps=' \
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graphviz==0.11 \
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' \
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&& apt-get update \
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&& apt-get -y install htop apt-utils graphviz libgraphviz-dev \
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&& pip install --no-cache-dir $buildDeps
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# Install various extensions
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RUN jupyter labextension install @jupyterlab/github
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RUN jupyter labextension install jupyterlab-drawio
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RUN jupyter labextension install jupyter-leaflet
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RUN jupyter labextension install @jupyterlab/plotly-extension
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RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager
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RUN pip install --no-cache-dir jupyter-tabnine==1.0.2 && \
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jupyter nbextension install --py jupyter_tabnine && \
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jupyter nbextension enable --py jupyter_tabnine && \
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jupyter serverextension enable --py jupyter_tabnine
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RUN fix-permissions $CONDA_DIR
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RUN conda install -c conda-forge jupyter_contrib_nbextensions && \
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conda install -c conda-forge jupyter_nbextensions_configurator && \
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jupyter nbextension enable codefolding/main
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RUN jupyter labextension install @ijmbarr/jupyterlab_spellchecker
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# Copying config and fix permissions
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COPY jupyter_notebook_config.json /etc/jupyter/
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RUN fix-permissions /home/$NB_USER
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# Switch back to jovyan to avoid accidental container runs as root
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USER $NB_UID
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