deleting build scripts within src

.gitignore

@@ -113,4 +113,4 @@ venv.bak/
 # Added config to hide hashe of changed password
 src/jupyter_notebook_config.json
 .build/docker-stacks
-.idea
+.idea

src/fix-permissions

@@ -1,35 +0,0 @@
-#!/bin/bash
-# set permissions on a directory
-# after any installation, if a directory needs to be (human) user-writable,
-# run this script on it.
-# It will make everything in the directory owned by the group $NB_GID
-# and writable by that group.
-# Deployments that want to set a specific user id can preserve permissions
-# by adding the `--group-add users` line to `docker run`.
-
-# uses find to avoid touching files that already have the right permissions,
-# which would cause massive image explosion
-
-# right permissions are:
-# group=$NB_GID
-# AND permissions include group rwX (directory-execute)
-# AND directories have setuid,setgid bits set
-
-set -e
-
-for d in "$@"; do
-  find "$d" \
-    ! \( \
-      -group $NB_GID \
-      -a -perm -g+rwX  \
-    \) \
-    -exec chgrp $NB_GID {} \; \
-    -exec chmod g+rwX {} \;
-  # setuid,setgid *on directories only*
-  find "$d" \
-    \( \
-        -type d \
-        -a ! -perm -6000  \
-    \) \
-    -exec chmod +6000 {} \;
-done

src/jupyter_notebook_config.py

@@ -1,55 +0,0 @@
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-
-from jupyter_core.paths import jupyter_data_dir
-import subprocess
-import os
-import errno
-import stat
-
-c = get_config()
-c.NotebookApp.ip = '0.0.0.0'
-c.NotebookApp.port = 8888
-c.NotebookApp.open_browser = False
-
-# https://github.com/jupyter/notebook/issues/3130
-c.FileContentsManager.delete_to_trash = False
-
-# Generate a self-signed certificate
-if 'GEN_CERT' in os.environ:
-    dir_name = jupyter_data_dir()
-    pem_file = os.path.join(dir_name, 'notebook.pem')
-    try:
-        os.makedirs(dir_name)
-    except OSError as exc:  # Python >2.5
-        if exc.errno == errno.EEXIST and os.path.isdir(dir_name):
-            pass
-        else:
-            raise
-
-    # Generate an openssl.cnf file to set the distinguished name
-    cnf_file = os.path.join(os.getenv('CONDA_DIR', '/usr/lib'), 'ssl', 'openssl.cnf')
-    if not os.path.isfile(cnf_file):
-        with open(cnf_file, 'w') as fh:
-            fh.write('''\
-[req]
-distinguished_name = req_distinguished_name
-[req_distinguished_name]
-''')
-
-    # Generate a certificate if one doesn't exist on disk
-    subprocess.check_call(['openssl', 'req', '-new',
-                           '-newkey', 'rsa:2048',
-                           '-days', '365',
-                           '-nodes', '-x509',
-                           '-subj', '/C=XX/ST=XX/L=XX/O=generated/CN=generated',
-                           '-keyout', pem_file,
-                           '-out', pem_file])
-    # Restrict access to the file
-    os.chmod(pem_file, stat.S_IRUSR | stat.S_IWUSR)
-    c.NotebookApp.certfile = pem_file
-
-# Change default umask for all subprocesses of the notebook server if set in
-# the environment
-if 'NB_UMASK' in os.environ:
-    os.umask(int(os.environ['NB_UMASK'], 8))

src/start-notebook.sh

@@ -1,15 +0,0 @@
-#!/bin/bash
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-
-set -e
-
-if [[ ! -z "${JUPYTERHUB_API_TOKEN}" ]]; then
-  # launched by JupyterHub, use single-user entrypoint
-  exec /usr/local/bin/start-singleuser.sh "$@"
-elif [[ ! -z "${JUPYTER_ENABLE_LAB}" ]]; then
-  . /usr/local/bin/start.sh jupyter lab "$@"
-else
-  . /usr/local/bin/start.sh jupyter notebook "$@"
-fi
-

src/start-singleuser.sh

@@ -1,44 +0,0 @@
-#!/bin/bash
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-
-set -e
-
-# set default ip to 0.0.0.0
-if [[ "$NOTEBOOK_ARGS $@" != *"--ip="* ]]; then
-  NOTEBOOK_ARGS="--ip=0.0.0.0 $NOTEBOOK_ARGS"
-fi
-
-# handle some deprecated environment variables
-# from DockerSpawner < 0.8.
-# These won't be passed from DockerSpawner 0.9,
-# so avoid specifying --arg=empty-string
-if [ ! -z "$NOTEBOOK_DIR" ]; then
-  NOTEBOOK_ARGS="--notebook-dir='$NOTEBOOK_DIR' $NOTEBOOK_ARGS"
-fi
-if [ ! -z "$JPY_PORT" ]; then
-  NOTEBOOK_ARGS="--port=$JPY_PORT $NOTEBOOK_ARGS"
-fi
-if [ ! -z "$JPY_USER" ]; then
-  NOTEBOOK_ARGS="--user=$JPY_USER $NOTEBOOK_ARGS"
-fi
-if [ ! -z "$JPY_COOKIE_NAME" ]; then
-  NOTEBOOK_ARGS="--cookie-name=$JPY_COOKIE_NAME $NOTEBOOK_ARGS"
-fi
-if [ ! -z "$JPY_BASE_URL" ]; then
-  NOTEBOOK_ARGS="--base-url=$JPY_BASE_URL $NOTEBOOK_ARGS"
-fi
-if [ ! -z "$JPY_HUB_PREFIX" ]; then
-  NOTEBOOK_ARGS="--hub-prefix=$JPY_HUB_PREFIX $NOTEBOOK_ARGS"
-fi
-if [ ! -z "$JPY_HUB_API_URL" ]; then
-  NOTEBOOK_ARGS="--hub-api-url=$JPY_HUB_API_URL $NOTEBOOK_ARGS"
-fi
-if [ ! -z "$JUPYTER_ENABLE_LAB" ]; then
-  NOTEBOOK_BIN="jupyter labhub"
-else
-  NOTEBOOK_BIN="jupyterhub-singleuser"
-fi
-
-. /usr/local/bin/start.sh $NOTEBOOK_BIN $NOTEBOOK_ARGS "$@"
-

src/start.sh

@@ -1,152 +0,0 @@
-#!/bin/bash
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-
-set -e
-
-# Exec the specified command or fall back on bash
-if [ $# -eq 0 ]; then
-    cmd=( "bash" )
-else
-    cmd=( "$@" )
-fi
-
-run-hooks () {
-    # Source scripts or run executable files in a directory
-    if [[ ! -d "$1" ]] ; then
-        return
-    fi
-    echo "$0: running hooks in $1"
-    for f in "$1/"*; do
-        case "$f" in
-            *.sh)
-                echo "$0: running $f"
-                source "$f"
-                ;;
-            *)
-                if [[ -x "$f" ]] ; then
-                    echo "$0: running $f"
-                    "$f"
-                else
-                    echo "$0: ignoring $f"
-                fi
-                ;;
-        esac
-    done
-    echo "$0: done running hooks in $1"
-}
-
-run-hooks /usr/local/bin/start-notebook.d
-
-# Handle special flags if we're root
-if [ $(id -u) == 0 ] ; then
-
-    # Only attempt to change the jovyan username if it exists
-    if id jovyan &> /dev/null ; then
-        echo "Set username to: $NB_USER"
-        usermod -d /home/$NB_USER -l $NB_USER jovyan
-    fi
-
-    # Handle case where provisioned storage does not have the correct permissions by default
-    # Ex: default NFS/EFS (no auto-uid/gid)
-    if [[ "$CHOWN_HOME" == "1" || "$CHOWN_HOME" == 'yes' ]]; then
-        echo "Changing ownership of /home/$NB_USER to $NB_UID:$NB_GID with options '${CHOWN_HOME_OPTS}'"
-        chown $CHOWN_HOME_OPTS $NB_UID:$NB_GID /home/$NB_USER
-    fi
-    if [ ! -z "$CHOWN_EXTRA" ]; then
-        for extra_dir in $(echo $CHOWN_EXTRA | tr ',' ' '); do
-            echo "Changing ownership of ${extra_dir} to $NB_UID:$NB_GID with options '${CHOWN_EXTRA_OPTS}'"
-            chown $CHOWN_EXTRA_OPTS $NB_UID:$NB_GID $extra_dir
-        done
-    fi
-
-    # handle home and working directory if the username changed
-    if [[ "$NB_USER" != "jovyan" ]]; then
-        # changing username, make sure homedir exists
-        # (it could be mounted, and we shouldn't create it if it already exists)
-        if [[ ! -e "/home/$NB_USER" ]]; then
-            echo "Relocating home dir to /home/$NB_USER"
-            mv /home/jovyan "/home/$NB_USER"
-        fi
-        # if workdir is in /home/jovyan, cd to /home/$NB_USER
-        if [[ "$PWD/" == "/home/jovyan/"* ]]; then
-            newcwd="/home/$NB_USER/${PWD:13}"
-            echo "Setting CWD to $newcwd"
-            cd "$newcwd"
-        fi
-    fi
-
-    # Change UID of NB_USER to NB_UID if it does not match
-    if [ "$NB_UID" != $(id -u $NB_USER) ] ; then
-        echo "Set $NB_USER UID to: $NB_UID"
-        usermod -u $NB_UID $NB_USER
-    fi
-
-    # Set NB_USER primary gid to NB_GID (after making the group).  Set
-    # supplementary gids to NB_GID and 100.
-    if [ "$NB_GID" != $(id -g $NB_USER) ] ; then
-        echo "Add $NB_USER to group: $NB_GID"
-        groupadd -g $NB_GID -o ${NB_GROUP:-${NB_USER}}
-        usermod  -g $NB_GID -aG 100 $NB_USER
-    fi
-
-    # Enable sudo if requested
-    if [[ "$GRANT_SUDO" == "1" || "$GRANT_SUDO" == 'yes' ]]; then
-        echo "Granting $NB_USER sudo access and appending $CONDA_DIR/bin to sudo PATH"
-        echo "$NB_USER ALL=(ALL) NOPASSWD:ALL" > /etc/sudoers.d/notebook
-    fi
-
-    # Add $CONDA_DIR/bin to sudo secure_path
-    sed -r "s#Defaults\s+secure_path=\"([^\"]+)\"#Defaults secure_path=\"\1:$CONDA_DIR/bin\"#" /etc/sudoers | grep secure_path > /etc/sudoers.d/path
-
-    # Exec the command as NB_USER with the PATH and the rest of
-    # the environment preserved
-    run-hooks /usr/local/bin/before-notebook.d
-    echo "Executing the command: ${cmd[@]}"
-    exec sudo -E -H -u $NB_USER PATH=$PATH XDG_CACHE_HOME=/home/$NB_USER/.cache PYTHONPATH=${PYTHONPATH:-} "${cmd[@]}"
-else
-    if [[ "$NB_UID" == "$(id -u jovyan)" && "$NB_GID" == "$(id -g jovyan)" ]]; then
-        # User is not attempting to override user/group via environment
-        # variables, but they could still have overridden the uid/gid that
-        # container runs as. Check that the user has an entry in the passwd
-        # file and if not add an entry.
-        STATUS=0 && whoami &> /dev/null || STATUS=$? && true
-        if [[ "$STATUS" != "0" ]]; then
-            if [[ -w /etc/passwd ]]; then
-                echo "Adding passwd file entry for $(id -u)"
-                cat /etc/passwd | sed -e "s/^jovyan:/nayvoj:/" > /tmp/passwd
-                echo "jovyan:x:$(id -u):$(id -g):,,,:/home/jovyan:/bin/bash" >> /tmp/passwd
-                cat /tmp/passwd > /etc/passwd
-                rm /tmp/passwd
-            else
-                echo 'Container must be run with group "root" to update passwd file'
-            fi
-        fi
-
-        # Warn if the user isn't going to be able to write files to $HOME.
-        if [[ ! -w /home/jovyan ]]; then
-            echo 'Container must be run with group "users" to update files'
-        fi
-    else
-        # Warn if looks like user want to override uid/gid but hasn't
-        # run the container as root.
-        if [[ ! -z "$NB_UID" && "$NB_UID" != "$(id -u)" ]]; then
-            echo 'Container must be run as root to set $NB_UID'
-        fi
-        if [[ ! -z "$NB_GID" && "$NB_GID" != "$(id -g)" ]]; then
-            echo 'Container must be run as root to set $NB_GID'
-        fi
-    fi
-
-    # Warn if looks like user want to run in sudo mode but hasn't run
-    # the container as root.
-    if [[ "$GRANT_SUDO" == "1" || "$GRANT_SUDO" == 'yes' ]]; then
-        echo 'Container must be run as root to grant sudo permissions'
-    fi
-
-    # Execute the command
-    run-hooks /usr/local/bin/before-notebook.d
-    echo "Executing the command: ${cmd[@]}"
-    exec "${cmd[@]}"
-fi
-