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build Dockerfile on latest version of docker-stack

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Christoph Schranz
2020-02-20 11:03:48 +01:00
parent ac678594e9
commit dd7c6c75ef
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# Update conda
RUN conda update -n base conda -y
USER root
# Install rpy2 to share data between Python and R
RUN conda install rpy2=2.9.4 plotly=4.4.1
RUN conda install -c conda-forge ipyleaflet
# Install important packages and Graphviz
RUN set -ex \
&& buildDeps=' \
graphviz==0.11 \
' \
&& apt-get update \
&& apt-get -y install htop apt-utils graphviz libgraphviz-dev \
&& pip install --no-cache-dir $buildDeps
# Install various extensions
RUN jupyter labextension install @jupyterlab/github
RUN jupyter labextension install jupyterlab-drawio
RUN jupyter labextension install jupyter-leaflet
RUN jupyter labextension install @jupyterlab/plotly-extension
RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager
RUN pip install --no-cache-dir jupyter-tabnine==1.0.2 && \
jupyter nbextension install --py jupyter_tabnine && \
jupyter nbextension enable --py jupyter_tabnine && \
jupyter serverextension enable --py jupyter_tabnine
RUN fix-permissions $CONDA_DIR
RUN conda install -c conda-forge jupyter_contrib_nbextensions && \
conda install -c conda-forge jupyter_nbextensions_configurator && \
jupyter nbextension enable codefolding/main
RUN jupyter labextension install @ijmbarr/jupyterlab_spellchecker
# Copying config and fix permissions
COPY jupyter_notebook_config.json /etc/jupyter/
RUN fix-permissions /home/$NB_USER
# Switch back to jovyan to avoid accidental container runs as root
USER $NB_UID