build Dockerfile on latest version of docker-stack

.gitignore

@@ -112,3 +112,6 @@ venv.bak/
 
 # Added config to hide hashe of changed password
 src/jupyter_notebook_config.json
+.build/
+!.build/.gitkeep
+.idea

Dockerfile

@@ -0,0 +1,432 @@
+# Use NVIDIA CUDA as base image and run the same installation as in the other packages.
+FROM nvidia/cuda:10.1-base-ubuntu18.04
+LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
+
+############################################################################
+#################### Dependency: jupyter/base-image ########################
+############################################################################
+
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+
+# Ubuntu 18.04 (bionic)
+# https://hub.docker.com/_/ubuntu/?tab=tags&name=bionic
+ARG ROOT_CONTAINER=ubuntu:bionic-20200112@sha256:bc025862c3e8ec4a8754ea4756e33da6c41cba38330d7e324abd25c8e0b93300
+
+LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
+ARG NB_USER="jovyan"
+ARG NB_UID="1000"
+ARG NB_GID="100"
+
+USER root
+
+# Install all OS dependencies for notebook server that starts but lacks all
+# features (e.g., download as all possible file formats)
+ENV DEBIAN_FRONTEND noninteractive
+RUN apt-get update \
+ && apt-get install -yq --no-install-recommends \
+    wget \
+    bzip2 \
+    ca-certificates \
+    sudo \
+    locales \
+    fonts-liberation \
+    run-one \
+ && apt-get clean && rm -rf /var/lib/apt/lists/*
+
+RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && \
+    locale-gen
+
+# Configure environment
+ENV CONDA_DIR=/opt/conda \
+    SHELL=/bin/bash \
+    NB_USER=$NB_USER \
+    NB_UID=$NB_UID \
+    NB_GID=$NB_GID \
+    LC_ALL=en_US.UTF-8 \
+    LANG=en_US.UTF-8 \
+    LANGUAGE=en_US.UTF-8
+ENV PATH=$CONDA_DIR/bin:$PATH \
+    HOME=/home/$NB_USER
+
+# Copy a script that we will use to correct permissions after running certain commands
+COPY fix-permissions /usr/local/bin/fix-permissions
+RUN chmod a+rx /usr/local/bin/fix-permissions
+
+# Enable prompt color in the skeleton .bashrc before creating the default NB_USER
+RUN sed -i 's/^#force_color_prompt=yes/force_color_prompt=yes/' /etc/skel/.bashrc
+
+# Create NB_USER wtih name jovyan user with UID=1000 and in the 'users' group
+# and make sure these dirs are writable by the `users` group.
+RUN echo "auth requisite pam_deny.so" >> /etc/pam.d/su && \
+    sed -i.bak -e 's/^%admin/#%admin/' /etc/sudoers && \
+    sed -i.bak -e 's/^%sudo/#%sudo/' /etc/sudoers && \
+    useradd -m -s /bin/bash -N -u $NB_UID $NB_USER && \
+    mkdir -p $CONDA_DIR && \
+    chown $NB_USER:$NB_GID $CONDA_DIR && \
+    chmod g+w /etc/passwd && \
+    fix-permissions $HOME && \
+    fix-permissions "$(dirname $CONDA_DIR)"
+
+USER $NB_UID
+WORKDIR $HOME
+ARG PYTHON_VERSION=default
+
+# Setup work directory for backward-compatibility
+RUN mkdir /home/$NB_USER/work && \
+    fix-permissions /home/$NB_USER
+
+# Install conda as jovyan and check the md5 sum provided on the download site
+ENV MINICONDA_VERSION=4.7.12.1 \
+    MINICONDA_MD5=81c773ff87af5cfac79ab862942ab6b3 \
+    CONDA_VERSION=4.7.12
+
+RUN cd /tmp && \
+    wget --quiet https://repo.continuum.io/miniconda/Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh && \
+    echo "${MINICONDA_MD5} *Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh" | md5sum -c - && \
+    /bin/bash Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh -f -b -p $CONDA_DIR && \
+    rm Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh && \
+    echo "conda ${CONDA_VERSION}" >> $CONDA_DIR/conda-meta/pinned && \
+    conda config --system --prepend channels conda-forge && \
+    conda config --system --set auto_update_conda false && \
+    conda config --system --set show_channel_urls true && \
+    if [ ! $PYTHON_VERSION = 'default' ]; then conda install --yes python=$PYTHON_VERSION; fi && \
+    conda list python | grep '^python ' | tr -s ' ' | cut -d '.' -f 1,2 | sed 's/$/.*/' >> $CONDA_DIR/conda-meta/pinned && \
+    conda install --quiet --yes conda && \
+    conda install --quiet --yes pip && \
+    conda update --all --quiet --yes && \
+    conda clean --all -f -y && \
+    rm -rf /home/$NB_USER/.cache/yarn && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER
+
+# Install Tini
+RUN conda install --quiet --yes 'tini=0.18.0' && \
+    conda list tini | grep tini | tr -s ' ' | cut -d ' ' -f 1,2 >> $CONDA_DIR/conda-meta/pinned && \
+    conda clean --all -f -y && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER
+
+# Install Jupyter Notebook, Lab, and Hub
+# Generate a notebook server config
+# Cleanup temporary files
+# Correct permissions
+# Do all this in a single RUN command to avoid duplicating all of the
+# files across image layers when the permissions change
+RUN conda install --quiet --yes \
+    'notebook=6.0.3' \
+    'jupyterhub=1.1.0' \
+    'jupyterlab=1.2.5' && \
+    conda clean --all -f -y && \
+    npm cache clean --force && \
+    jupyter notebook --generate-config && \
+    rm -rf $CONDA_DIR/share/jupyter/lab/staging && \
+    rm -rf /home/$NB_USER/.cache/yarn && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER
+
+EXPOSE 8888
+
+# Configure container startup
+ENTRYPOINT ["tini", "-g", "--"]
+CMD ["start-notebook.sh"]
+
+# Copy local files as late as possible to avoid cache busting
+COPY start.sh /usr/local/bin/
+COPY start-notebook.sh /usr/local/bin/
+COPY start-singleuser.sh /usr/local/bin/
+COPY jupyter_notebook_config.py /etc/jupyter/
+
+# Fix permissions on /etc/jupyter as root
+USER root
+RUN fix-permissions /etc/jupyter/
+
+# Switch back to jovyan to avoid accidental container runs as root
+USER $NB_UID
+
+############################################################################
+################# Dependency: jupyter/minimal-notebook #####################
+############################################################################
+
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+
+LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
+
+USER root
+
+# Install all OS dependencies for fully functional notebook server
+RUN apt-get update && apt-get install -yq --no-install-recommends \
+    build-essential \
+    emacs \
+    git \
+    inkscape \
+    jed \
+    libsm6 \
+    libxext-dev \
+    libxrender1 \
+    lmodern \
+    netcat \
+    python-dev \
+    # ---- nbconvert dependencies ----
+    texlive-xetex \
+    texlive-fonts-recommended \
+    texlive-generic-recommended \
+    # Optional dependency
+    texlive-fonts-extra \
+    # ----
+    tzdata \
+    unzip \
+    nano \
+    && apt-get clean && rm -rf /var/lib/apt/lists/*
+
+# Switch back to jovyan to avoid accidental container runs as root
+USER $NB_UID
+
+############################################################################
+################# Dependency: jupyter/scipy-notebook #######################
+############################################################################
+
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+
+LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
+
+USER root
+
+# ffmpeg for matplotlib anim
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends ffmpeg && \
+    rm -rf /var/lib/apt/lists/*
+
+USER $NB_UID
+
+# Install Python 3 packages
+RUN conda install --quiet --yes \
+    'beautifulsoup4=4.8.*' \
+    'conda-forge::blas=*=openblas' \
+    'bokeh=1.4.*' \
+    'cloudpickle=1.2.*' \
+    'cython=0.29.*' \
+    'dask=2.9.*' \
+    'dill=0.3.*' \
+    'h5py=2.10.*' \
+    'hdf5=1.10.*' \
+    'ipywidgets=7.5.*' \
+    'matplotlib-base=3.1.*' \
+    'numba=0.48.*' \
+    'numexpr=2.7.*' \
+    'pandas=0.25.*' \
+    'patsy=0.5.*' \
+    'protobuf=3.11.*' \
+    'scikit-image=0.16.*' \
+    'scikit-learn=0.22.*' \
+    'scipy=1.4.*' \
+    'seaborn=0.9.*' \
+    'sqlalchemy=1.3.*' \
+    'statsmodels=0.11.*' \
+    'sympy=1.5.*' \
+    'vincent=0.4.*' \
+    'xlrd' \
+    && \
+    conda clean --all -f -y && \
+    # Activate ipywidgets extension in the environment that runs the notebook server
+    jupyter nbextension enable --py widgetsnbextension --sys-prefix && \
+    # Also activate ipywidgets extension for JupyterLab
+    # Check this URL for most recent compatibilities
+    # https://github.com/jupyter-widgets/ipywidgets/tree/master/packages/jupyterlab-manager
+    jupyter labextension install @jupyter-widgets/jupyterlab-manager@^1.0.1 --no-build && \
+    jupyter labextension install jupyterlab_bokeh@1.0.0 --no-build && \
+    jupyter lab build && \
+    npm cache clean --force && \
+    rm -rf $CONDA_DIR/share/jupyter/lab/staging && \
+    rm -rf /home/$NB_USER/.cache/yarn && \
+    rm -rf /home/$NB_USER/.node-gyp && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER
+
+# Install facets which does not have a pip or conda package at the moment
+RUN cd /tmp && \
+    git clone https://github.com/PAIR-code/facets.git && \
+    cd facets && \
+    jupyter nbextension install facets-dist/ --sys-prefix && \
+    cd && \
+    rm -rf /tmp/facets && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER
+
+# Import matplotlib the first time to build the font cache.
+ENV XDG_CACHE_HOME /home/$NB_USER/.cache/
+RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" && \
+    fix-permissions /home/$NB_USER
+
+USER $NB_UID
+
+############################################################################
+################ Dependency: jupyter/datascience-notebook ##################
+############################################################################
+
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+
+LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
+
+# Set when building on Travis so that certain long-running build steps can
+# be skipped to shorten build time.
+ARG TEST_ONLY_BUILD
+
+USER root
+
+# R pre-requisites
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends \
+    fonts-dejavu \
+    gfortran \
+    gcc && \
+    rm -rf /var/lib/apt/lists/*
+
+# Julia dependencies
+# install Julia packages in /opt/julia instead of $HOME
+ENV JULIA_DEPOT_PATH=/opt/julia
+ENV JULIA_PKGDIR=/opt/julia
+ENV JULIA_VERSION=1.3.1
+
+RUN mkdir /opt/julia-${JULIA_VERSION} && \
+    cd /tmp && \
+    wget -q https://julialang-s3.julialang.org/bin/linux/x64/`echo ${JULIA_VERSION} | cut -d. -f 1,2`/julia-${JULIA_VERSION}-linux-x86_64.tar.gz && \
+    echo "faa707c8343780a6fe5eaf13490355e8190acf8e2c189b9e7ecbddb0fa2643ad *julia-${JULIA_VERSION}-linux-x86_64.tar.gz" | sha256sum -c - && \
+    tar xzf julia-${JULIA_VERSION}-linux-x86_64.tar.gz -C /opt/julia-${JULIA_VERSION} --strip-components=1 && \
+    rm /tmp/julia-${JULIA_VERSION}-linux-x86_64.tar.gz
+RUN ln -fs /opt/julia-*/bin/julia /usr/local/bin/julia
+
+# Show Julia where conda libraries are \
+RUN mkdir /etc/julia && \
+    echo "push!(Libdl.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" >> /etc/julia/juliarc.jl && \
+    # Create JULIA_PKGDIR \
+    mkdir $JULIA_PKGDIR && \
+    chown $NB_USER $JULIA_PKGDIR && \
+    fix-permissions $JULIA_PKGDIR
+
+USER $NB_UID
+
+# R packages including IRKernel which gets installed globally.
+RUN conda install --quiet --yes \
+    'r-base=3.6.2' \
+    'r-caret=6.0*' \
+    'r-crayon=1.3*' \
+    'r-devtools=2.2*' \
+    'r-forecast=8.10*' \
+    'r-hexbin=1.28*' \
+    'r-htmltools=0.4*' \
+    'r-htmlwidgets=1.5*' \
+    'r-irkernel=1.1*' \
+    'r-nycflights13=1.0*' \
+    'r-plyr=1.8*' \
+    'r-randomforest=4.6*' \
+    'r-rcurl=1.98*' \
+    'r-reshape2=1.4*' \
+    'r-rmarkdown=2.1*' \
+    'r-rsqlite=2.1*' \
+    'r-shiny=1.3*' \
+    'r-tidyverse=1.3*' \
+    'rpy2=3.1*' \
+    && \
+    conda clean --all -f -y && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER
+
+# Add Julia packages. Only add HDF5 if this is not a test-only build since
+# it takes roughly half the entire build time of all of the images on Travis
+# to add this one package and often causes Travis to timeout.
+#
+# Install IJulia as jovyan and then move the kernelspec out
+# to the system share location. Avoids problems with runtime UID change not
+# taking effect properly on the .local folder in the jovyan home dir.
+RUN julia -e 'import Pkg; Pkg.update()' && \
+    (test $TEST_ONLY_BUILD || julia -e 'import Pkg; Pkg.add("HDF5")') && \
+    julia -e "using Pkg; pkg\"add IJulia\"; pkg\"precompile\"" && \
+    # move kernelspec out of home \
+    mv $HOME/.local/share/jupyter/kernels/julia* $CONDA_DIR/share/jupyter/kernels/ && \
+    chmod -R go+rx $CONDA_DIR/share/jupyter && \
+    rm -rf $HOME/.local && \
+    fix-permissions $JULIA_PKGDIR $CONDA_DIR/share/jupyter
+
+############################################################################
+################ Dependency: jupyter/tensorflow-notebook ###################
+############################################################################
+
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+
+LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
+
+# Install Tensorflow
+RUN pip install --quiet \
+    'tensorflow==2.1.0' && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER
+
+############################################################################
+########################## Dependency: pytorch #############################
+############################################################################
+
+# Install PyTorch dependencies
+RUN conda install --quiet --yes \
+    pyyaml mkl mkl-include setuptools cmake cffi typing && \
+    conda clean --all -f -y && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER
+
+# Install PyTorch
+RUN conda install -y -c pytorch \
+    cudatoolkit=10.1 \
+    'pytorch=1.3.1' \
+    torchvision && \
+    conda clean --all -f -y && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER
+
+############################################################################
+############################ Useful packages ###############################
+############################################################################
+
+# Update conda
+RUN conda update -n base conda -y
+
+USER root
+
+# Install rpy2 to share data between Python and R
+RUN conda install rpy2=2.9.4 plotly=4.4.1
+RUN conda install -c conda-forge ipyleaflet
+
+# Install important packages and Graphviz
+RUN set -ex \
+ && buildDeps=' \
+    graphviz==0.11 \
+' \
+ && apt-get update \
+ && apt-get -y install htop apt-utils graphviz libgraphviz-dev \
+ && pip install --no-cache-dir $buildDeps
+
+# Install various extensions
+RUN jupyter labextension install @jupyterlab/github
+RUN jupyter labextension install jupyterlab-drawio
+RUN jupyter labextension install jupyter-leaflet
+RUN jupyter labextension install @jupyterlab/plotly-extension
+RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager
+RUN pip install --no-cache-dir jupyter-tabnine==1.0.2  && \
+  jupyter nbextension install --py jupyter_tabnine && \
+  jupyter nbextension enable --py jupyter_tabnine && \
+  jupyter serverextension enable --py jupyter_tabnine
+RUN fix-permissions $CONDA_DIR
+RUN conda install -c conda-forge jupyter_contrib_nbextensions && \
+  conda install -c conda-forge jupyter_nbextensions_configurator && \
+  jupyter nbextension enable codefolding/main
+RUN jupyter labextension install @ijmbarr/jupyterlab_spellchecker
+
+# Copying config and fix permissions
+COPY jupyter_notebook_config.json /etc/jupyter/
+RUN fix-permissions /home/$NB_USER
+
+# Switch back to jovyan to avoid accidental container runs as root
+USER $NB_UID

generate_Dockerfile.sh

@@ -0,0 +1,77 @@
+#!/usr/bin/env bash
+cd $(cd -P -- "$(dirname -- "$0")" && pwd -P)
+
+# Set the path of the generated Dockerfile
+export DOCKERFILE=".build/Dockerfile"
+export STACKS_DIR=".build/docker-stacks"
+
+
+# Clone if docker-stacks doesn't exist, and pull.
+ls $STACKS_DIR/README.md  > /dev/null 2>&1  || (echo "Docker-stacks was not found, cloning repository" \
+ && git clone https://github.com/jupyter/docker-stacks.git $STACKS_DIR)
+git pull -f $STACKS_DIR
+
+# Write the contents into the DOCKERFILE and start with the header
+cat src/Dockerfile.header > $DOCKERFILE
+cp src/jupyter_notebook_config.json .build/
+
+echo "
+############################################################################
+#################### Dependency: jupyter/base-image ########################
+############################################################################
+" >> $DOCKERFILE
+cat $STACKS_DIR/base-notebook/Dockerfile | grep -v BASE_CONTAINER >> $DOCKERFILE
+cp $STACKS_DIR/base-notebook/fix-permissions .build/
+cp $STACKS_DIR/base-notebook/jupyter_notebook_config.py .build/
+cp $STACKS_DIR/base-notebook/start.sh .build/
+cp $STACKS_DIR/base-notebook/start-notebook.sh .build/
+cp $STACKS_DIR/base-notebook/start-singleuser.sh .build/
+
+echo "
+############################################################################
+################# Dependency: jupyter/minimal-notebook #####################
+############################################################################
+" >> $DOCKERFILE
+cat $STACKS_DIR/minimal-notebook/Dockerfile | grep -v BASE_CONTAINER >> $DOCKERFILE
+
+echo "
+############################################################################
+################# Dependency: jupyter/scipy-notebook #######################
+############################################################################
+" >> $DOCKERFILE
+cat $STACKS_DIR/scipy-notebook/Dockerfile | grep -v BASE_CONTAINER >> $DOCKERFILE
+
+echo "
+############################################################################
+################ Dependency: jupyter/datascience-notebook ##################
+############################################################################
+" >> $DOCKERFILE
+cat $STACKS_DIR/datascience-notebook/Dockerfile | grep -v BASE_CONTAINER >> $DOCKERFILE
+
+echo "
+############################################################################
+################ Dependency: jupyter/tensorflow-notebook ###################
+############################################################################
+" >> $DOCKERFILE
+cat $STACKS_DIR/tensorflow-notebook/Dockerfile | grep -v BASE_CONTAINER >> $DOCKERFILE
+
+# Note that the following step also installs the cudatoolkit, which is
+# essential to access the GPU.
+echo "
+############################################################################
+########################## Dependency: pytorch #############################
+############################################################################
+" >> $DOCKERFILE
+cat src/Dockerfile.pytorch >> $DOCKERFILE
+
+
+echo "
+############################################################################
+############################ Useful packages ###############################
+############################################################################
+" >> $DOCKERFILE
+cat src/Dockerfile.usefulpackages >> $DOCKERFILE
+
+cp $DOCKERFILE Dockerfile
+echo "GPU Dockerfile was generated sucessfully in file $(pwd)/${DOCKERFILE} and copied to ./Dockerfile"
+echo "Run 'bash run_Dockerfile.sh -p [PORT]' to start the GPU-based Juyterlab instance."

run_Dockerfile.sh

@@ -0,0 +1,28 @@
+#!/usr/bin/env bash
+cd $(cd -P -- "$(dirname -- "$0")" && pwd -P)
+
+# Fetching port
+PORT=0
+HELP=0
+while [[ "$#" -gt 0 ]]; do case $1 in
+  -p|--port) PORT="$2"; shift;;
+  -h|--help) HELP=1;;
+  *) echo "Unknown parameter passed: $1"; exit 1;;
+esac; shift; done
+
+# Print help
+if [[ $HELP != 0 ]]; then
+    echo "Usage: $0 -p [port] # port must be an integer with 4 or more digits."
+    exit 21
+fi
+
+# Check if port is valid
+if [[ $PORT != [0-9][0-9][0-9][0-9]* ]]; then
+    echo "The port is not set or invalid."
+    echo "Usage: $0 -p [port] # port must be an integer with 4 or more digits."
+    exit 22
+fi
+
+# Build and run the Dockerfile
+docker build -t gpu-jupyter .
+docker run -d -p "$PORT":8888 gpu-jupyter

src/Dockerfile.header

@@ -0,0 +1,3 @@
+# Use NVIDIA CUDA as base image and run the same installation as in the other packages.
+FROM nvidia/cuda:10.1-base-ubuntu18.04
+LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"

src/Dockerfile.pytorch

@@ -0,0 +1,15 @@
+# Install PyTorch dependencies
+RUN conda install --quiet --yes \
+    pyyaml mkl mkl-include setuptools cmake cffi typing && \
+    conda clean --all -f -y && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER
+
+# Install PyTorch
+RUN conda install -y -c pytorch \
+    cudatoolkit=10.1 \
+    'pytorch=1.3.1' \
+    torchvision && \
+    conda clean --all -f -y && \
+    fix-permissions $CONDA_DIR && \
+    fix-permissions /home/$NB_USER

src/Dockerfile.usefulpackages

@@ -0,0 +1,40 @@
+# Update conda
+RUN conda update -n base conda -y
+
+USER root
+
+# Install rpy2 to share data between Python and R
+RUN conda install rpy2=2.9.4 plotly=4.4.1
+RUN conda install -c conda-forge ipyleaflet
+
+# Install important packages and Graphviz
+RUN set -ex \
+ && buildDeps=' \
+    graphviz==0.11 \
+' \
+ && apt-get update \
+ && apt-get -y install htop apt-utils graphviz libgraphviz-dev \
+ && pip install --no-cache-dir $buildDeps
+
+# Install various extensions
+RUN jupyter labextension install @jupyterlab/github
+RUN jupyter labextension install jupyterlab-drawio
+RUN jupyter labextension install jupyter-leaflet
+RUN jupyter labextension install @jupyterlab/plotly-extension
+RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager
+RUN pip install --no-cache-dir jupyter-tabnine==1.0.2  && \
+  jupyter nbextension install --py jupyter_tabnine && \
+  jupyter nbextension enable --py jupyter_tabnine && \
+  jupyter serverextension enable --py jupyter_tabnine
+RUN fix-permissions $CONDA_DIR
+RUN conda install -c conda-forge jupyter_contrib_nbextensions && \
+  conda install -c conda-forge jupyter_nbextensions_configurator && \
+  jupyter nbextension enable codefolding/main
+RUN jupyter labextension install @ijmbarr/jupyterlab_spellchecker
+
+# Copying config and fix permissions
+COPY jupyter_notebook_config.json /etc/jupyter/
+RUN fix-permissions /home/$NB_USER
+
+# Switch back to jovyan to avoid accidental container runs as root
+USER $NB_UID