locate skaffold file
This commit is contained in:
Lee moon soo
parent
614135933b
commit
e89d351621
@ -278,102 +278,6 @@ RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" && \
|
||||
|
||||
USER $NB_UID
|
||||
|
||||
WORKDIR $HOME
|
||||
|
||||
############################################################################
|
||||
################ Dependency: jupyter/datascience-notebook ##################
|
||||
############################################################################
|
||||
|
||||
# Copyright (c) Jupyter Development Team.
|
||||
# Distributed under the terms of the Modified BSD License.
|
||||
|
||||
LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
|
||||
|
||||
# Set when building on Travis so that certain long-running build steps can
|
||||
# be skipped to shorten build time.
|
||||
ARG TEST_ONLY_BUILD
|
||||
|
||||
# Fix DL4006
|
||||
SHELL ["/bin/bash", "-o", "pipefail", "-c"]
|
||||
|
||||
USER root
|
||||
|
||||
# R pre-requisites
|
||||
RUN apt-get update && \
|
||||
apt-get install -y --no-install-recommends \
|
||||
fonts-dejavu \
|
||||
gfortran \
|
||||
gcc && \
|
||||
rm -rf /var/lib/apt/lists/*
|
||||
|
||||
# Julia dependencies
|
||||
# install Julia packages in /opt/julia instead of $HOME
|
||||
ENV JULIA_DEPOT_PATH=/opt/julia
|
||||
ENV JULIA_PKGDIR=/opt/julia
|
||||
ENV JULIA_VERSION=1.4.1
|
||||
|
||||
WORKDIR /tmp
|
||||
|
||||
# hadolint ignore=SC2046
|
||||
RUN mkdir "/opt/julia-${JULIA_VERSION}" && \
|
||||
wget -q https://julialang-s3.julialang.org/bin/linux/x64/$(echo "${JULIA_VERSION}" | cut -d. -f 1,2)"/julia-${JULIA_VERSION}-linux-x86_64.tar.gz" && \
|
||||
echo "fd6d8cadaed678174c3caefb92207a3b0e8da9f926af6703fb4d1e4e4f50610a *julia-${JULIA_VERSION}-linux-x86_64.tar.gz" | sha256sum -c - && \
|
||||
tar xzf "julia-${JULIA_VERSION}-linux-x86_64.tar.gz" -C "/opt/julia-${JULIA_VERSION}" --strip-components=1 && \
|
||||
rm "/tmp/julia-${JULIA_VERSION}-linux-x86_64.tar.gz"
|
||||
RUN ln -fs /opt/julia-*/bin/julia /usr/local/bin/julia
|
||||
|
||||
# Show Julia where conda libraries are \
|
||||
RUN mkdir /etc/julia && \
|
||||
echo "push!(Libdl.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" >> /etc/julia/juliarc.jl && \
|
||||
# Create JULIA_PKGDIR \
|
||||
mkdir "${JULIA_PKGDIR}" && \
|
||||
chown "${NB_USER}" "${JULIA_PKGDIR}" && \
|
||||
fix-permissions "${JULIA_PKGDIR}"
|
||||
|
||||
USER $NB_UID
|
||||
|
||||
# R packages including IRKernel which gets installed globally.
|
||||
RUN conda install --quiet --yes \
|
||||
'r-base=3.6.3' \
|
||||
'r-caret=6.0*' \
|
||||
'r-crayon=1.3*' \
|
||||
'r-devtools=2.3*' \
|
||||
'r-forecast=8.12*' \
|
||||
'r-hexbin=1.28*' \
|
||||
'r-htmltools=0.4*' \
|
||||
'r-htmlwidgets=1.5*' \
|
||||
'r-irkernel=1.1*' \
|
||||
'r-nycflights13=1.0*' \
|
||||
'r-plyr=1.8*' \
|
||||
'r-randomforest=4.6*' \
|
||||
'r-rcurl=1.98*' \
|
||||
'r-reshape2=1.4*' \
|
||||
'r-rmarkdown=2.1*' \
|
||||
'r-rsqlite=2.2*' \
|
||||
'r-shiny=1.4*' \
|
||||
'r-tidyverse=1.3*' \
|
||||
'rpy2=3.1*' \
|
||||
&& \
|
||||
conda clean --all -f -y && \
|
||||
fix-permissions "${CONDA_DIR}" && \
|
||||
fix-permissions "/home/${NB_USER}"
|
||||
|
||||
# Add Julia packages. Only add HDF5 if this is not a test-only build since
|
||||
# it takes roughly half the entire build time of all of the images on Travis
|
||||
# to add this one package and often causes Travis to timeout.
|
||||
#
|
||||
# Install IJulia as jovyan and then move the kernelspec out
|
||||
# to the system share location. Avoids problems with runtime UID change not
|
||||
# taking effect properly on the .local folder in the jovyan home dir.
|
||||
RUN julia -e 'import Pkg; Pkg.update()' && \
|
||||
(test $TEST_ONLY_BUILD || julia -e 'import Pkg; Pkg.add("HDF5")') && \
|
||||
julia -e "using Pkg; pkg\"add IJulia\"; pkg\"precompile\"" && \
|
||||
# move kernelspec out of home \
|
||||
mv "${HOME}/.local/share/jupyter/kernels/julia"* "${CONDA_DIR}/share/jupyter/kernels/" && \
|
||||
chmod -R go+rx "${CONDA_DIR}/share/jupyter" && \
|
||||
rm -rf "${HOME}/.local" && \
|
||||
fix-permissions "${JULIA_PKGDIR}" "${CONDA_DIR}/share/jupyter"
|
||||
|
||||
WORKDIR $HOME
|
||||
|
||||
############################################################################
|
||||
@ -409,51 +313,5 @@ RUN conda clean --all -f -y && \
|
||||
fix-permissions $CONDA_DIR && \
|
||||
fix-permissions /home/$NB_USER
|
||||
|
||||
############################################################################
|
||||
############################ Useful packages ###############################
|
||||
############################################################################
|
||||
|
||||
LABEL maintainer="Christoph Schranz <christoph.schranz@salzburgresearch.at>"
|
||||
|
||||
USER root
|
||||
|
||||
# Install elasticsearch libs
|
||||
USER root
|
||||
RUN apt-get update \
|
||||
&& curl -sL https://repo1.maven.org/maven2/org/elasticsearch/elasticsearch-hadoop/6.8.1/elasticsearch-hadoop-6.8.1.jar
|
||||
RUN pip install --no-cache-dir elasticsearch==7.1.0
|
||||
|
||||
RUN pip install --no-cache-dir ipyleaflet plotly==4.8.* "ipywidgets>=7.5"
|
||||
|
||||
# Install important packages and Graphviz
|
||||
RUN set -ex \
|
||||
&& buildDeps=' \
|
||||
graphviz==0.11 \
|
||||
' \
|
||||
&& apt-get update \
|
||||
&& apt-get -y install htop apt-utils graphviz libgraphviz-dev \
|
||||
&& pip install --no-cache-dir $buildDeps
|
||||
|
||||
# Install various extensions
|
||||
RUN fix-permissions $CONDA_DIR
|
||||
RUN jupyter labextension install @jupyterlab/github
|
||||
RUN jupyter labextension install jupyterlab-drawio
|
||||
RUN jupyter labextension install jupyter-leaflet
|
||||
RUN jupyter labextension install jupyterlab-plotly@4.8.1
|
||||
RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager
|
||||
RUN pip install --no-cache-dir jupyter-tabnine==1.0.2 && \
|
||||
jupyter nbextension install --py jupyter_tabnine && \
|
||||
jupyter nbextension enable --py jupyter_tabnine && \
|
||||
jupyter serverextension enable --py jupyter_tabnine
|
||||
RUN pip install --no-cache-dir jupyter_contrib_nbextensions \
|
||||
jupyter_nbextensions_configurator rise && \
|
||||
jupyter nbextension enable codefolding/main
|
||||
RUN jupyter labextension install @ijmbarr/jupyterlab_spellchecker
|
||||
|
||||
RUN fix-permissions /home/$NB_USER
|
||||
|
||||
# Switch back to jovyan to avoid accidental container runs as root
|
||||
USER $NB_UID
|
||||
|
||||
# Copy jupyter_notebook_config.json
|
||||
COPY jupyter_notebook_config.json /etc/jupyter/
|
||||
|
||||
@ -9,10 +9,10 @@ build:
|
||||
deploy:
|
||||
kubectl:
|
||||
manifests:
|
||||
- k8s.yaml
|
||||
- .staroid/k8s.yaml
|
||||
profiles:
|
||||
- name: minikube
|
||||
patches:
|
||||
- op: add
|
||||
path: /deploy/kubectl/manifests/0
|
||||
value: minikube.yaml
|
||||
value: .staroid/minikube.yaml
|
||||
|
||||
@ -3,7 +3,8 @@ apiVersion: beta/v1
|
||||
starRank:
|
||||
rate: 1.0 # set community rate here. https://staroid.com/site/starrank
|
||||
build:
|
||||
skaffold: {}
|
||||
skaffold:
|
||||
file: .staroid/skaffold.yaml
|
||||
ingress:
|
||||
- serviceName: jupyter
|
||||
port: 8888
|
||||
|
||||
Loading…
Reference in New Issue
Block a user