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Installing recommended packages and update conda, sample code with performance test

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Christoph Schranz
2019-12-20 11:23:31 +01:00
parent 2990c25457
commit e3a0bf2799
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@@ -417,6 +417,44 @@ RUN conda install -y -c pytorch \
############################ Useful packages ###############################
############################################################################
# Update conda
RUN conda update -n base conda -y
# Install elasticsearch libs
USER root
RUN apt-get update \
&& curl -sL http://central.maven.org/maven2/org/elasticsearch/elasticsearch-hadoop/6.8.1/elasticsearch-hadoop-6.8.1.jar
RUN pip install --no-cache-dir elasticsearch==7.1.0
# Install rpy2 to share data between Python and R
RUN conda install rpy2=2.9.4 plotly=4.4.1
RUN conda install -c conda-forge ipyleaflet
# Install important packages and Graphviz
RUN set -ex \
&& buildDeps=' \
graphviz==0.11 \
' \
&& apt-get update \
&& apt-get -y install htop apt-utils graphviz libgraphviz-dev \
&& pip install --no-cache-dir $buildDeps
# Install various extensions
RUN jupyter labextension install @jupyterlab/github
RUN jupyter labextension install jupyterlab-drawio
RUN jupyter labextension install jupyter-leaflet
RUN jupyter labextension install @jupyterlab/plotly-extension
RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager
RUN pip install --no-cache-dir jupyter-tabnine==1.0.2 && \
jupyter nbextension install --py jupyter_tabnine && \
jupyter nbextension enable --py jupyter_tabnine && \
jupyter serverextension enable --py jupyter_tabnine
RUN conda install -c conda-forge jupyter_contrib_nbextensions && \
conda install -c conda-forge jupyter_nbextensions_configurator && \
jupyter nbextension enable codefolding/main
RUN jupyter labextension install @ijmbarr/jupyterlab_spellchecker
# Copying config and fix permissions
COPY jupyter_notebook_config.json /etc/jupyter/
RUN fix-permissions /home/$NB_USER